WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00024756 Gene Name  Cbr-glr-5
Sequence Name  ? CBG01531 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ligand-gated monoatomic ion channel activity and signaling receptor activity. Predicted to be involved in monoatomic ion transport. Predicted to be located in membrane. Is an ortholog of C. elegans glr-5. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG01531.1 CBG01531.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG01531 CBG01531   [unknown]

0 RNAi Result

22 Allele

Public Name
WBVar00068621
WBVar00068636
WBVar00068606
WBVar00068641
WBVar00068611
WBVar00068626
WBVar00068631
WBVar00068616
WBVar00057604
WBVar00057599
WBVar00057589
WBVar00057594
WBVar00057584
WBVar00068581
WBVar00026149
WBVar00026154
WBVar00068586
WBVar00068591
WBVar00026159
WBVar00026164
WBVar00068596
WBVar00068601

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-glr-5, TTTGGAATACAGTATGGTACGTGTTGAGTACAATGTTAAAAGGTGGATGTGACTTTGGAC, WBGene00024756   Expr1056510 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  located_in

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region