WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00024790 Gene Name  Cbr-svh-1
Sequence Name  ? CBG01571 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be located in membrane. Is an ortholog of C. elegans svh-1. In C. elegans, svh-1 is involved in several processes, including axon regeneration; positive regulation of multicellular organismal process; and protein destabilization. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG01571.1 CBG01571.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG01571 CBG01571   [unknown]

0 RNAi Result

26 Allele

Public Name
WBVar00141590
WBVar00141591
WBVar00141592
WBVar00043824
WBVar00043829
WBVar00043834
WBVar00043839
WBVar00043844
WBVar00043809
WBVar00043804
WBVar00043819
WBVar00043814
WBVar00068741
WBVar00014789
WBVar00014794
WBVar00068746
WBVar00068751
WBVar00014799
WBVar00014804
WBVar00068756
WBVar00068761
WBVar00014809
WBVar00014814
WBVar00068766
WBVar00068771
WBVar00014819

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-try-2, GTGCACAGAAGAAACAACCGGGTATTTATACTATGGTGGCTCCATATCTCTCATGGATTA, WBGene00024790   Expr1060094 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region