WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00024792 Gene Name  Cbr-nhr-66
Sequence Name  ? CBG01574 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-66. In C. elegans, nhr-66 is involved in negative regulation of transcription by RNA polymerase II. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG01574a.1 CBG01574a.1   [unknown]
Transcript:CBG01574b.1 CBG01574b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG01574a CBG01574a   [unknown]
CDS:CBG01574b CBG01574b   [unknown]

0 RNAi Result

22 Allele

Public Name
WBVar00043849
WBVar00014874
WBVar00068826
WBVar00014909
WBVar00068831
WBVar00014879
WBVar00068801
WBVar00014914
WBVar00014884
WBVar00068836
WBVar00014854
WBVar00068806
WBVar00014889
WBVar00068811
WBVar00014859
WBVar00014894
WBVar00014864
WBVar00068816
WBVar00014899
WBVar00068821
WBVar00014869
WBVar00014904

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG26448, CATCGATTCCAGCCGAACTGTTGCTCCAATTAAGCAGACTGGATAATATCAATCTTCTGC, WBGene00087862   Expr1064463 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cbr-nhr-66, AAAACATCTGAAAACATGCATATGCTGCGAGTATTCGATTTGATCCCTGCTGACGCTTGT, WBGene00024792   Expr1063947 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region