WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025040 Gene Name  Cbr-slc-17.1
Sequence Name  ? CBG01860 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Is an ortholog of C. elegans slc-17.1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG01860a.1 CBG01860a.1   [unknown]
Transcript:CBG01860b.1 CBG01860b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG01860b CBG01860b   [unknown]
CDS:CBG01860a CBG01860a   [unknown]

0 RNAi Result

11 Allele

Public Name
WBVar00053824
WBVar00053794
WBVar00053799
WBVar00053784
WBVar00053789
WBVar00053779
WBVar00053814
WBVar00053819
WBVar00053804
WBVar00053809
WBVar00021679

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG01860, GAATGTAATTATGTACATCATTATATCTGTCTATCTTGCTGGAGCCGCATTCTTCTGGAA, WBGene00025040   Expr1052723 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region