WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025136 Gene Name  Cbr-unc-58
Sequence Name  ? CBG01980 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans unc-58. In C. elegans, unc-58 is involved in several processes, including muscle contraction; parturition; and regulation of muscle contraction. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

6 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG01980c.1 CBG01980c.1   [unknown]
Transcript:CBG01980b.1 CBG01980b.1   [unknown]
Transcript:CBG01980e.1 CBG01980e.1   [unknown]
Transcript:CBG01980d.1 CBG01980d.1   [unknown]
Transcript:CBG01980a.1 CBG01980a.1   [unknown]
Transcript:CBG01980f.1 CBG01980f.1   [unknown]
 

Other

6 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG01980b CBG01980b   [unknown]
CDS:CBG01980c CBG01980c   [unknown]
CDS:CBG01980a CBG01980a   [unknown]
CDS:CBG01980f CBG01980f   [unknown]
CDS:CBG01980d CBG01980d   [unknown]
CDS:CBG01980e CBG01980e   [unknown]

0 RNAi Result

11 Allele

Public Name
WBVar00054209
WBVar00054214
WBVar00022074
WBVar00022059
WBVar00022079
WBVar00022064
WBVar00022049
WBVar00022084
WBVar00022069
WBVar00022054
WBVar00022089

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-unc-58, GTTTTAATCTAATTGTCACAGTGGGTCTTGGCGACATTGTTGTTACGGATTACATATTTC, WBGene00025136   Expr1064008 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region