WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025194 Gene Name  Cbr-unc-2
Sequence Name  ? CBG02059 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable voltage-gated calcium channel activity. Predicted to be involved in calcium ion transmembrane transport. Predicted to be located in plasma membrane. Predicted to be part of voltage-gated calcium channel complex. Is an ortholog of C. elegans unc-2. In C. elegans, unc-2 is involved in several processes, including determination of left/right asymmetry in nervous system; negative regulation of transforming growth factor beta receptor signaling pathway; and response to stress. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

7 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG02059f.1 CBG02059f.1   [unknown]
Transcript:CBG02059g.1 CBG02059g.1   [unknown]
Transcript:CBG02059e.1 CBG02059e.1   [unknown]
Transcript:CBG02059d.1 CBG02059d.1   [unknown]
Transcript:CBG02059c.1 CBG02059c.1   [unknown]
Transcript:CBG02059b.1 CBG02059b.1   [unknown]
Transcript:CBG02059a.1 CBG02059a.1   [unknown]
 

Other

7 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG02059f CBG02059f   [unknown]
CDS:CBG02059g CBG02059g   [unknown]
CDS:CBG02059b CBG02059b   [unknown]
CDS:CBG02059c CBG02059c   [unknown]
CDS:CBG02059d CBG02059d   [unknown]
CDS:CBG02059e CBG02059e   [unknown]
CDS:CBG02059a CBG02059a   [unknown]

0 RNAi Result

23 Allele

Public Name
WBVar00141700
WBVar00141696
WBVar00141697
WBVar00141698
WBVar00141699
WBVar00141692
WBVar00141693
WBVar00141694
WBVar00141695
WBVar00141689
WBVar00141690
WBVar00141691
WBVar00106956
WBVar00106957
WBVar00106954
WBVar00106955
WBVar00054314
WBVar00054319
WBVar00054304
WBVar00054309
WBVar00054299
WBVar00022514
WBVar00022519

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

4 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG02060, TTCGAGAAGCCCAATATACTCGGATGATTCTAGTGTCGCTGAAAGTTATAGACGGGAAAG, WBGene00025195   Expr1067891 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cbr-unc-2, GCCTAGCGTACAAACATCTGATTCGAATGAACATGCCTGTTGCTGAAGATGGAACAGTTC, WBGene00025194   Expr1064885 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG02054, TGTCAGCGATCATAAGACATGTGCACTGTTGATGACGAGGATGAAAGAGGCAAGTAGACA, WBGene00025192   Expr1055717 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG02056, CGATTGCCGCATCAGAAATCATACCATCCCCGATACAGCCGCGAAAAATTTCCATCAATG, WBGene00025193   Expr1063989 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

9 GO Annotation

Annotation Extension Qualifier
  involved_in
  located_in
  located_in
  part_of
  enables
  enables
  enables
  involved_in
  involved_in

0 Homologues

0 Locations

9 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  located_in
  located_in
  part_of
  enables
  enables
  enables
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region