WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025432 Gene Name  Cbr-gcy-12
Sequence Name  ? CBG02368 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable protein kinase activity. Predicted to be involved in cyclic nucleotide biosynthetic process and intracellular signal transduction. Is an ortholog of C. elegans gcy-12. In C. elegans, gcy-12 is involved in negative regulation of dauer larval development; regulation of growth; and regulation of locomotion involved in locomotory behavior. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG02368a.1 CBG02368a.1   [unknown]
Transcript:CBG02368b.1 CBG02368b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG02368b CBG02368b   [unknown]
CDS:CBG02368a CBG02368a   [unknown]

0 RNAi Result

1 Allele

Public Name
WBVar00135973

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-gcy-12, TGGAAGAGATGGTTACGAATTCACAGAGACAATCGAGGATAAGATGGTTGTGCCAGATAT, WBGene00025432   Expr1055654 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  involved_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region