WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025456 Gene Name  CBG02397
Sequence Name  ? CBG02397 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable GTPase activator activity. Is an ortholog of C. elegans F07F6.4. In C. elegans, F07F6.4 is involved in IRE1-mediated unfolded protein response. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG02397a.1 CBG02397a.1   [unknown]
Transcript:CBG02397b.1 CBG02397b.1   [unknown]
Transcript:CBG02397b.2 CBG02397b.2   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG02397b CBG02397b   [unknown]
CDS:CBG02397a CBG02397a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG02397, GAGCCAACAAAGTCGCTGAAAAATGGTCCACCCTCTCGACATCATTTGCTTCTTACATGT, WBGene00025456   Expr1050899 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region