WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025572 Gene Name  Cbr-vps-35
Sequence Name  ? CBG02534 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in protein transport and retrograde transport, endosome to Golgi. Predicted to be part of retromer, cargo-selective complex. Is an ortholog of C. elegans vps-35. In C. elegans, vps-35 is involved in positive regulation of protein localization to cell periphery; protein localization to postsynaptic membrane; and regulation of presynapse assembly. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG02534.1 CBG02534.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG02534 CBG02534   [unknown]

0 RNAi Result

2 Allele

Public Name
WBVar00107443
WBVar00107442

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-vps-35, TGTTCAACTGGACGTCTCTGCTGAAGCTGATAATCTAGAGAAGCAACTTGGAGAAACGAT, WBGene00025572   Expr1065687 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  involved_in
  involved_in
  part_of

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  involved_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region