WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025673 Gene Name  Cbr-dgk-5
Sequence Name  ? CBG02659 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP-dependent diacylglycerol kinase activity. Predicted to be involved in protein kinase C-activating G protein-coupled receptor signaling pathway. Is an ortholog of C. elegans dgk-5. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG02659b.1 CBG02659b.1   [unknown]
Transcript:CBG02659a.1 CBG02659a.1   [unknown]
Transcript:CBG02659c.1 CBG02659c.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG02659b CBG02659b   [unknown]
CDS:CBG02659c CBG02659c   [unknown]
CDS:CBG02659a CBG02659a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-dgk-5, CACAACATTACTTACTACGCAGGAGGAACGATTCCATGGGGTGAATCTTCTGAATCCAAA, WBGene00025673   Expr1054147 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG02658, CGCATCATCCTTCTATGAATGCACAAATGCTTTTCGAAACTTGCCATTTTCTTCCACTTC, WBGene00025672   Expr1050215 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region