WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025816 Gene Name  Cbr-din-1
Sequence Name  ? CBG02844 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable nucleic acid binding activity. Is an ortholog of C. elegans din-1. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

11 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG02844b.1 CBG02844b.1   [unknown]
Transcript:CBG02844c.1 CBG02844c.1   [unknown]
Transcript:CBG02844a.1 CBG02844a.1   [unknown]
Transcript:CBG02844g.5 CBG02844g.5   [unknown]
Transcript:CBG02844g.2 CBG02844g.2   [unknown]
Transcript:CBG02844g.1 CBG02844g.1   [unknown]
Transcript:CBG02844g.4 CBG02844g.4   [unknown]
Transcript:CBG02844g.3 CBG02844g.3   [unknown]
Transcript:CBG02844e.1 CBG02844e.1   [unknown]
Transcript:CBG02844d.1 CBG02844d.1   [unknown]
Transcript:CBG02844f.1 CBG02844f.1   [unknown]
 

Other

7 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG02844g CBG02844g   [unknown]
CDS:CBG02844f CBG02844f   [unknown]
CDS:CBG02844e CBG02844e   [unknown]
CDS:CBG02844d CBG02844d   [unknown]
CDS:CBG02844c CBG02844c   [unknown]
CDS:CBG02844b CBG02844b   [unknown]
CDS:CBG02844a CBG02844a   [unknown]

0 RNAi Result

29 Allele

Public Name
WBVar00136007
WBVar00136008
WBVar00136009
WBVar00107778
WBVar00107777
WBVar00107776
WBVar00107775
WBVar00107774
WBVar00107773
WBVar00107772
WBVar00107771
WBVar00107781
WBVar00107780
WBVar00107789
WBVar00107788
WBVar00107787
WBVar00107786
WBVar00107785
WBVar00107784
WBVar00107783
WBVar00107782
WBVar00107779
WBVar00107792
WBVar00107791
WBVar00107790
WBVar00107796
WBVar00107795
WBVar00107794
WBVar00107793

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-din-1, AATATGCATGCTGTCTTGCACTATCAGCAGTCACCGATTACGATGAATTGGCCAAGAATG, WBGene00025816   Expr1057373 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG25590, TCCTTTATATCACCTATATGGACACTCGTTCAGCTTCAGTTGCATGCAATAGCGAGAAAC, WBGene00087004   Expr1064765 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region