WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025889 Gene Name  Cbr-rsf-1
Sequence Name  ? CBG02930 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in signal transduction. Is an ortholog of C. elegans rsf-1. In C. elegans, rsf-1 is involved in several processes, including chromosome condensation; positive regulation of response to oxidative stress; and regulation of vulval development. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG02930b.1 CBG02930b.1   [unknown]
Transcript:CBG02930a.1 CBG02930a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG02930a CBG02930a   [unknown]
CDS:CBG02930b CBG02930b   [unknown]

0 RNAi Result

3 Allele

Public Name
WBVar00136011
WBVar00136012
WBVar00136013

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG02930, TTCTCATCCAAAAACTCATTCACCCTTCCAAAATCATTCTCTCCAGTAGACAGCATTCGA, WBGene00025889   Expr1050534 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  involved_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region