WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025910 Gene Name  Cbr-ptr-13
Sequence Name  ? CBG02953 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be located in membrane. Is an ortholog of C. elegans ptr-13. In C. elegans, ptr-13 is involved in molting cycle. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG02953.1 CBG02953.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG02953 CBG02953   [unknown]

0 RNAi Result

11 Allele

Public Name
WBVar00136016
WBVar00136017
WBVar00136018
WBVar00136019
WBVar00136020
WBVar00136021
WBVar00136022
WBVar00136023
WBVar00136024
WBVar00136025
WBVar00136026

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-ptr-13, CATGGCTCCGTTGTTTGTAGTTCCAGTTTATATGATTCAATCGTTTGCGAAAACGGTAAC, WBGene00025910   Expr1063254 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  located_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region