WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00026003 Gene Name  Cbr-rpb-6
Sequence Name  ? CBG03063 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable DNA binding activity and DNA-directed 5'-3' RNA polymerase activity. Predicted to be involved in DNA-templated transcription. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II, core complex. Is an ortholog of C. elegans rpb-6. In C. elegans, rpb-6 is involved in regulation of cell cycle switching, mitotic to meiotic cell cycle. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG03063.1 CBG03063.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG03063 CBG03063   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-rpb-6, ATGGTCGAGCTTGAAGGAGAGACCGATCCACTCGAGATTGCCAGAAAAGAACTCAAGCAA, WBGene00026003   Expr1055377 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  involved_in
  located_in
  part_of
  enables
  enables

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  located_in
  part_of
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region