WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00026180 Gene Name  Cbr-vha-4
Sequence Name  ? CBG03298 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable proton transmembrane transporter activity. Predicted to be involved in proton transmembrane transport. Predicted to be part of proton-transporting two-sector ATPase complex, proton-transporting domain. Is an ortholog of C. elegans vha-4. In C. elegans, vha-4 is involved in embryo development. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

6 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG03298.6 CBG03298.6   [unknown]
Transcript:CBG03298.5 CBG03298.5   [unknown]
Transcript:CBG03298.4 CBG03298.4   [unknown]
Transcript:CBG03298.3 CBG03298.3   [unknown]
Transcript:CBG03298.2 CBG03298.2   [unknown]
Transcript:CBG03298.1 CBG03298.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG03298 CBG03298   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG03300, GTTTGCATTAGCCATCGTCACTGGATTTGGCCGAAGTTTGACTGTTGTAGGAAGAGTTTT, WBGene00026182   Expr1060224 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG03299, GAACAATTTCTGATGCCTATCCAATGGACAATCTTCAGCAAGTTATGGTCAACGCTCACG, WBGene00026181   Expr1055297 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cbr-vha-4, CCTCTTCGGAATGATCATCGGAATTGTTCAAACCAACAAGGCGTCGTTCGGAAACAAGTA, WBGene00026180   Expr1064170 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  part_of

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region