WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00026308 Gene Name  Cbr-rrp-1
Sequence Name  ? CBG03442 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in rRNA processing. Predicted to be part of preribosome, small subunit precursor. Is an ortholog of C. elegans rrp-1. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

6 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG03442.2 CBG03442.2   [unknown]
Transcript:CBG03442.1 CBG03442.1   [unknown]
Transcript:CBG03442.4 CBG03442.4   [unknown]
Transcript:CBG03442.3 CBG03442.3   [unknown]
Transcript:CBG03442.6 CBG03442.6   [unknown]
Transcript:CBG03442.5 CBG03442.5   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG03442 CBG03442   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG03442, GCTCATCTTGCCGGTTTGAAATGGAAGAAAGAGATTCGTGATCAGTATTGGAACGTTTTC, WBGene00026308   Expr1050365 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  involved_in
  part_of

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region