WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00026482 Gene Name  Cbr-lat-2
Sequence Name  ? CBG03673 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable G protein-coupled receptor activity and carbohydrate binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Is an ortholog of C. elegans lat-2. In C. elegans, lat-2 is involved in self proteolysis. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG03673.1 CBG03673.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG03673 CBG03673   [unknown]

0 RNAi Result

11 Allele

Public Name
WBVar00108713
WBVar00108712
WBVar00108711
WBVar00108710
WBVar00108709
WBVar00108708
WBVar00108707
WBVar00108706
WBVar00108705
WBVar00108714
WBVar00018769

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-lat-2, TCAATCCCGTGATCGTACAAAATGGGGAAGAATCATCGGATGGCTAAAAGGATCTGCGAC, WBGene00026482   Expr1050794 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  located_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region