WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00027167 Gene Name  CBG04516
Sequence Name  ? CBG04516 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity and nucleobase-containing compound kinase activity. Predicted to be involved in nucleobase-containing compound metabolic process. Is an ortholog of C. elegans F13E6.2. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

5 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG04516e.1 CBG04516e.1   [unknown]
Transcript:CBG04516d.1 CBG04516d.1   [unknown]
Transcript:CBG04516c.1 CBG04516c.1   [unknown]
Transcript:CBG04516b.1 CBG04516b.1   [unknown]
Transcript:CBG04516a.1 CBG04516a.1   [unknown]
 

Other

5 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG04516a CBG04516a   [unknown]
CDS:CBG04516d CBG04516d   [unknown]
CDS:CBG04516e CBG04516e   [unknown]
CDS:CBG04516b CBG04516b   [unknown]
CDS:CBG04516c CBG04516c   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG04516, TGACCCAGAAGCGGTTCGTGCAAGAATGGAGTATTTCAAAAAGAACACGCTCCCAATGCT, WBGene00027167   Expr1051258 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region