WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00027634 Gene Name  Cbr-spe-8
Sequence Name  ? CBG05099 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable protein tyrosine kinase activity. Is an ortholog of C. elegans spe-8. In C. elegans, spe-8 is involved in spermatid development. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG05099b.1 CBG05099b.1   [unknown]
Transcript:CBG05099a.1 CBG05099a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG05099a CBG05099a   [unknown]
CDS:CBG05099b CBG05099b   [unknown]

0 RNAi Result

4 Allele

Public Name
WBVar00109929
v152
v159
v144

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-spe-8, CGGAGTTTGTGAAGGCCATATTTGAACAAAGCCGACTTTATGACACGGAGCAGAGAATCA, WBGene00027634   Expr1063830 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region