WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00027663 Gene Name  Cbr-vps-20
Sequence Name  ? CBG05144 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in vacuolar transport. Is an ortholog of C. elegans vps-20. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG05144.1 CBG05144.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG05144 CBG05144   [unknown]

0 RNAi Result

12 Allele

Public Name
WBVar00110036
WBVar00110037
WBVar00110034
WBVar00110035
WBVar00110038
WBVar00110039
WBVar00110040
WBVar00110043
WBVar00110044
WBVar00110041
WBVar00110042
WBVar00110033

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-vps-20, CAAGTTCCTGTAGATCTTCCAGAGGTTCCAGACCATGAAATGCCTGAAAAAGTTGCGGAA, WBGene00027663   Expr1062874 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  involved_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region