WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00027883 Gene Name  CBG05432
Sequence Name  ? CBG05432 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable phospholipase activity. Is an ortholog of C. elegans Y73B6BL.37. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG05432.1 CBG05432.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG05432 CBG05432   [unknown]

0 RNAi Result

26 Allele

Public Name
WBVar00044274
WBVar00110586
WBVar00110587
WBVar00110584
WBVar00110585
WBVar00110588
WBVar00110589
WBVar00110590
WBVar00110591
WBVar00110575
WBVar00110576
WBVar00110573
WBVar00110574
WBVar00110579
WBVar00110577
WBVar00110578
WBVar00110582
WBVar00110583
WBVar00110580
WBVar00110581
WBVar00110568
WBVar00110569
WBVar00110567
WBVar00110571
WBVar00110572
WBVar00110570

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG05432, GATGCTCAACAAGAAATTCAAGACTCTGGAATGTTCGACACCACCGACGATTTCACATTT, WBGene00027883   Expr1063926 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  enables

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region