WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00027947 Gene Name  Cbr-unc-77
Sequence Name  ? CBG05508 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable monoatomic cation channel activity. Predicted to be involved in monoatomic ion transport and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans unc-77. In C. elegans, unc-77 is involved in positive regulation of GABAergic synaptic transmission; positive regulation of cholinergic synaptic transmission; and positive regulation of locomotion. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG05508a.1 CBG05508a.1   [unknown]
Transcript:CBG05508c.1 CBG05508c.1   [unknown]
Transcript:CBG05508b.1 CBG05508b.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG05508a CBG05508a   [unknown]
CDS:CBG05508b CBG05508b   [unknown]
CDS:CBG05508c CBG05508c   [unknown]

0 RNAi Result

5 Allele

Public Name
WBVar00110642
WBVar00110645
WBVar00110643
WBVar00110644
WBVar00023249

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-nca-1, CCATCGACACAGGGAAGCCCGAGACCACTGATGCCGAGTGAAACTACAAAAGATATAGAA, WBGene00027947   Expr1050144 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in
  located_in

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region