WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

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Gene :

WormBase Gene ID  ? WBGene00028445 Gene Name  Cbr-ragc-1
Sequence Name  ? CBG06117 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable GTP binding activity. Is an ortholog of C. elegans ragc-1. In C. elegans, ragc-1 is involved in determination of adult lifespan and regulation of autophagosome assembly. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG06117.1 CBG06117.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG06117 CBG06117   [unknown]

0 RNAi Result

3 Allele

Public Name
WBVar00111266
WBVar00111267
WBVar00111265

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-ragc-1, GTTTTTATCATGAAGGAAGATGGCAACGAGAAGGCTGGTTTCATCGACCACAACTTTGGT, WBGene00028445   Expr1053352 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region