WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00029022 Gene Name  Cbr-glp-1
Sequence Name  ? CBG06809 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable calcium ion binding activity. Predicted to be involved in Notch signaling pathway and cell differentiation. Predicted to be located in membrane. Expressed in embryonic cell and germ line. Is an ortholog of C. elegans glp-1. In C. elegans, glp-1 is involved in several processes, including chordate pharyngeal muscle development; positive regulation of cell population proliferation; and regulation of gene expression. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG06809.1 CBG06809.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG06809 CBG06809   [unknown]

0 RNAi Result

5 Allele

Public Name
WBVar00111769
WBVar00111770
WBVar00111771
WBVar00111772
WBVar00021494

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in Cbr-htz-1(gu167) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-htz-1(gu167)_upregulated
  Transcripts that showed significantly increased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_upregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
    Expr10979 Cb-glp-1 mRNA is present throughout both the germline and embryo, but Cb-GLP-1 protein is present only in the mitotic region of the germline and only in the anterior blastomeres of the embryo.  
Cbr-glp-1, GAAGACTCCTATGATTCAAGAAACGAACCATTTGACGCCTCCACACTCGGATGGATCGTT, WBGene00029022   Expr1065366 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  involved_in
  located_in

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region