WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00029250 Gene Name  CBG07084
Sequence Name  ? CBG07084 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable transmembrane transporter activity. Predicted to be involved in monoatomic ion transport and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans T04B8.5. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG07084a.1 CBG07084a.1   [unknown]
Transcript:CBG07084b.1 CBG07084b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG07084a CBG07084a   [unknown]
CDS:CBG07084b CBG07084b   [unknown]

0 RNAi Result

1 Allele

Public Name
WBVar00007022

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in Cbr-htz-1(gu167) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-htz-1(gu167)_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG07084, GTGGTTCCTTGGGATCATGTTGTATGTCACTATCAACCAACAAACGGAGCAAGTGGCAAT, WBGene00029250   Expr1065351 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  located_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region