WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00029342 Gene Name  CBG07216
Sequence Name  ? CBG07216 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable metalloendopeptidase activity. Predicted to be involved in cell adhesion and proteolysis. Predicted to be located in membrane. Is an ortholog of C. elegans T13B5.9. Biotype  SO:0001217
Genetic Position  :±
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SummaryGenomicsOther
 
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SummaryGenomicsOther
 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG07216.1 CBG07216.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG07216 CBG07216   [unknown]

0 RNAi Result

33 Allele

Public Name
WBVar00042979
WBVar00042989
WBVar00042984
WBVar00112090
WBVar00112063
WBVar00112064
WBVar00112061
WBVar00112062
WBVar00112067
WBVar00112068
WBVar00112065
WBVar00112066
WBVar00112081
WBVar00112082
WBVar00112080
WBVar00112085
WBVar00112086
WBVar00112083
WBVar00112084
WBVar00112089
WBVar00112087
WBVar00112088
WBVar00112069
WBVar00112070
WBVar00112071
WBVar00112074
WBVar00112075
WBVar00112072
WBVar00112073
WBVar00112078

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG07216, ATGAAGGGGGTTGAAGCAGATGGGGAGAGAAAAAATCATTTGAATGAGTACATTTTTGGG, WBGene00029342   Expr1063585 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG25773, ATGATAAAGCATTTTCCAGCGAAATTCGAATTTTTCAGTTGTCCACCACCGCCAGGAGGA, WBGene00087187   Expr1052563 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  located_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region