WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00029498 Gene Name  Cbr-tre-4
Sequence Name  ? CBG07446 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable alpha,alpha-trehalase activity. Predicted to be involved in trehalose metabolic process. Is an ortholog of C. elegans tre-4. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG07446.1 CBG07446.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG07446 CBG07446   [unknown]

0 RNAi Result

13 Allele

Public Name
WBVar00045849
WBVar00045844
WBVar00045859
WBVar00045854
WBVar00045869
WBVar00045864
WBVar00045879
WBVar00045874
WBVar00045829
WBVar00045839
WBVar00045834
WBVar00045884
WBVar00112375

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tre-4, TTTCATAGAGACTGTTTACAATGGTATGTACAACCCTACTGGAGGGCTGACCGGGGGTGT, WBGene00029498   Expr1054310 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region