WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00029567 Gene Name  Cbr-slt-1
Sequence Name  ? CBG07570 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable calcium ion binding activity. Is an ortholog of C. elegans slt-1. In C. elegans, slt-1 is involved in generation of neurons and regulation of neuron projection development. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG07570.1 CBG07570.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG07570 CBG07570   [unknown]

0 RNAi Result

7 Allele

Public Name
WBVar00112563
WBVar00112562
WBVar00112567
WBVar00112566
WBVar00112565
WBVar00112564
WBVar00112568

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-slt-1, CAATACATTCTCAAATCTGACCCGGCTGTCGACACTCATTATCAGTTACAACAAACTGCG, WBGene00029567   Expr1068658 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region