WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00029644 Gene Name  Cbr-piki-1
Sequence Name  ? CBG07670 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable phosphatidylinositol binding activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Is an ortholog of C. elegans piki-1. In C. elegans, piki-1 is involved in several processes, including phagosome maturation involved in apoptotic cell clearance; phosphatidylinositol-3-phosphate biosynthetic process; and positive regulation of phagocytosis, engulfment. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG07670.1 CBG07670.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG07670 CBG07670   [unknown]

0 RNAi Result

3 Allele

Public Name
WBVar00008452
WBVar00008447
WBVar00112246

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-piki-1, ATGTCGTCAAGTTCGAGTTTCGCAAAGCAAGATCCACACAAGCTCAGCTTCGTTCCTGAA, WBGene00029644   Expr1069079 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region