WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00029808 Gene Name  Cbr-cox-10
Sequence Name  ? CBG07915 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable protoheme IX farnesyltransferase activity. Predicted to be involved in heme biosynthetic process. Predicted to be located in mitochondrial membrane. Is an ortholog of C. elegans cox-10. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG07915.1 CBG07915.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG07915 CBG07915   [unknown]

0 RNAi Result

17 Allele

Public Name
WBVar00046184
WBVar00046179
WBVar00046144
WBVar00046139
WBVar00046154
WBVar00046149
WBVar00046164
WBVar00046159
WBVar00046174
WBVar00046169
WBVar00046134
WBVar00046129
WBVar00112888
WBVar00112887
WBVar00016734
WBVar00016724
WBVar00016729

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG07915, AAACAGTCGAAAACTGTTCTTCTACTCGTTATTACACCTTCCATTGATCATGTTACTGAT, WBGene00029808   Expr1052305 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  located_in
  enables
  enables
  involved_in
  located_in

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  located_in
  enables
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region