WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00029880 Gene Name  CBG08005
Sequence Name  ? CBG08005 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable protein tyrosine phosphatase activity. Is an ortholog of C. elegans B0280.11 and F40G12.10. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG08005.1 CBG08005.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG08005 CBG08005   [unknown]

0 RNAi Result

13 Allele

Public Name
WBVar00000934
WBVar00000929
WBVar00000924
WBVar00113014
WBVar00113018
WBVar00113017
WBVar00113016
WBVar00113015
WBVar00113019
WBVar00113021
WBVar00113020
WBVar00113023
WBVar00113022

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG08005, TGCAATTGAGACGTTTTCTCAATACATGTCCACTTACATAATTGCACTGTATTACGGTCA, WBGene00029880   Expr1054731 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region