WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00029931 Gene Name  Cbr-unc-1
Sequence Name  ? CBG08066 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be located in plasma membrane. Is an ortholog of C. elegans unc-1. In C. elegans, unc-1 is involved in positive regulation of cell communication by electrical coupling and response to xenobiotic stimulus. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG08066c.1 CBG08066c.1   [unknown]
Transcript:CBG08066a.1 CBG08066a.1   [unknown]
Transcript:CBG08066b.1 CBG08066b.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG08066a CBG08066a   [unknown]
CDS:CBG08066b CBG08066b   [unknown]
CDS:CBG08066c CBG08066c   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-unc-1, AACAGAAAGCGTCGCGCGCTCTCAAAGAAGCAGCTGATGTCATTCAAGCCAATCCGGTGG, WBGene00029931   Expr1063596 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  located_in
  located_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  located_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region