WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00029944 Gene Name  Cbr-vps-45
Sequence Name  ? CBG08081 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in vesicle-mediated transport. Is an ortholog of C. elegans vps-45. In C. elegans, vps-45 is involved in pinocytosis and receptor-mediated endocytosis. Biotype  SO:0001217
Genetic Position 
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG08081.1 CBG08081.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG08081 CBG08081   [unknown]

0 RNAi Result

3 Allele

Public Name
WBVar00136809
WBVar00136811
WBVar00136810

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-vps-45, TAGTGATCGAACGTTTTCAAGACATTGCAACGCCGCTACTCAACCAATGGACTTATGAAG, WBGene00029944   Expr1052758 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  involved_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region