WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00030012 Gene Name  Cbr-egl-17
Sequence Name  ? CBG08160 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable growth factor activity. Is an ortholog of C. elegans egl-17. In C. elegans, egl-17 is involved in regulation of cell migration and regulation of egg-laying behavior. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG08160.1 CBG08160.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG08160 CBG08160   [unknown]

0 RNAi Result

2 Allele

Public Name
WBVar00013469
WBVar00013474

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-egl-17, AACCTCGATGTTTTGATTGGATCAAACTGGTACGGTATGTACCTGAATCTGAGAAAAATG, WBGene00030012   Expr1058083 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

1 Strains

WormBase ID
WBStrain00041118

0 Upstream Intergenic Region