WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00030137 Gene Name  Cbr-taf-6.2
Sequence Name  ? CBG08324 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable RNA polymerase II general transcription initiation factor activity and protein heterodimerization activity. Predicted to be involved in transcription initiation at RNA polymerase II promoter. Predicted to be part of SAGA complex; SLIK (SAGA-like) complex; and transcription factor TFIID complex. Is an ortholog of C. elegans taf-6.2. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG08324.1 CBG08324.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG08324 CBG08324   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-taf-6.2, GAGAGAGCATCTTAAGTCAATCGATCTACGCATCCAGAACTTCTGAACCATTGGCGAAGA, WBGene00030137   Expr1062893 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

6 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  part_of
  part_of
  part_of

0 Homologues

0 Locations

6 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  part_of
  part_of
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region