WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00030531 Gene Name  Cbr-prx-6
Sequence Name  ? CBG08802 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity and ATP hydrolysis activity. Is an ortholog of C. elegans prx-6. In C. elegans, prx-6 is involved in nematode larval development. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG08802.1 CBG08802.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG08802 CBG08802   [unknown]

0 RNAi Result

6 Allele

Public Name
WBVar00114062
WBVar00114061
WBVar00114060
WBVar00114064
WBVar00114063
WBVar00010209

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-prx-6, GATGAAAAAATGTCCGGTGCCCAGCTATTTTCAATTATCTCCAACGCGGGAATGGCTGCA, WBGene00030531   Expr1060081 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  enables

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region