WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00030550 Gene Name  Cbr-nas-9
Sequence Name  ? CBG08825 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable metalloendopeptidase activity and zinc ion binding activity. Predicted to be involved in proteolysis. Is an ortholog of C. elegans nas-9. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

6 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG08825.1 CBG08825.1   [unknown]
Transcript:CBG08825.2 CBG08825.2   [unknown]
Transcript:CBG08825.3 CBG08825.3   [unknown]
Transcript:CBG08825.4 CBG08825.4   [unknown]
Transcript:CBG08825.5 CBG08825.5   [unknown]
Transcript:CBG08825.6 CBG08825.6   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG08825 CBG08825   [unknown]

0 RNAi Result

18 Allele

Public Name
cbp40131
cbp40127
cbp40128
cbp40129
cbp40130
WBVar00114118
WBVar00114117
WBVar00114116
WBVar00114115
WBVar00114119
WBVar00114121
WBVar00114120
WBVar00114123
WBVar00114122
WBVar00114114
WBVar00114113
WBVar00114112
WBVar00114111

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-nas-9, GATGCGAAACTCTACACATCCTATGGTACCAAATACGCCTACGACTCTATAATGCACTAC, WBGene00030550   Expr1063564 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region