WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00030756 Gene Name  Cbr-ida-1
Sequence Name  ? CBG09094 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable protein tyrosine phosphatase activity. Predicted to be located in secretory granule. Is an ortholog of C. elegans ida-1. In C. elegans, ida-1 is involved in positive regulation of anterior/posterior axon guidance; positive regulation of neurotransmitter secretion; and ventral cord development. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG09094.1 CBG09094.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG09094 CBG09094   [unknown]

0 RNAi Result

22 Allele

Public Name
WBVar00114437
WBVar00114436
WBVar00114435
WBVar00114434
WBVar00114439
WBVar00114438
WBVar00114440
WBVar00114444
WBVar00114443
WBVar00114442
WBVar00114441
WBVar00114429
WBVar00114428
WBVar00114433
WBVar00114432
WBVar00114431
WBVar00114430
WBVar00114448
WBVar00114447
WBVar00114446
WBVar00114445
WBVar00114449

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-ida-1, ATTCAAACTTGTCTATGGATGTGTCGCCCAGGAAGTCAATCATCTTCTGAAGTCAATTGC, WBGene00030756   Expr1055547 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region