WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00030766 Gene Name  Cbr-thoc-2
Sequence Name  ? CBG09105 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in mRNA export from nucleus and mRNA processing. Predicted to be part of THO complex. Is an ortholog of C. elegans thoc-2. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG09105b.1 CBG09105b.1   [unknown]
Transcript:CBG09105a.1 CBG09105a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG09105b CBG09105b   [unknown]
CDS:CBG09105a CBG09105a   [unknown]

0 RNAi Result

3 Allele

Public Name
WBVar00114480
WBVar00114482
WBVar00114481

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-thoc-2, TCCTTCGTCTCCTCACTGCTTACTATCAGAAAGTTGAAAAAGGAGAATTGCAGAAGGATG, WBGene00030766   Expr1058823 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  involved_in
  part_of
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  part_of
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region