WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00030816 Gene Name  Cbr-mup-4
Sequence Name  ? CBG09178 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable calcium ion binding activity. Is an ortholog of C. elegans mup-4. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG09178b.1 CBG09178b.1   [unknown]
Transcript:CBG09178c.2 CBG09178c.2   [unknown]
Transcript:CBG09178c.1 CBG09178c.1   [unknown]
Transcript:CBG09178a.1 CBG09178a.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG09178c CBG09178c   [unknown]
CDS:CBG09178b CBG09178b   [unknown]
CDS:CBG09178a CBG09178a   [unknown]

0 RNAi Result

4 Allele

Public Name
WBVar00056904
WBVar00056889
WBVar00056894
WBVar00056899

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-mup-4, GCTCGGCGGCTGCCACGTGTATTGATAAGAAGGATGGATATGAGTGCAAGTGTCAAGAAG, WBGene00030816   Expr1052835 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region