WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00030885 Gene Name  Cbr-fut-8
Sequence Name  ? CBG09273 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable glycoprotein 6-alpha-L-fucosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi cisterna membrane. Is an ortholog of C. elegans fut-8. In C. elegans, fut-8 is involved in fucosylation and protein N-linked glycosylation. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG09273a.1 CBG09273a.1   [unknown]
Transcript:CBG09273b.1 CBG09273b.1   [unknown]
Transcript:CBG09273c.1 CBG09273c.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG09273c CBG09273c   [unknown]
CDS:CBG09273b CBG09273b   [unknown]
CDS:CBG09273a CBG09273a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-fut-8, CTGACGATGGATCCAAGTTCCATTCTCTTGACGACATTTATTATTTCGGTGGACAACAAG, WBGene00030885   Expr1066544 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  located_in
  located_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  located_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region