WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00031386 Gene Name  Cbr-gtf-2H3
Sequence Name  ? CBG09872 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in nucleotide-excision repair and regulation of DNA-templated transcription. Predicted to be part of transcription factor TFIIH core complex. Is an ortholog of C. elegans gtf-2H3. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG09872b.1 CBG09872b.1   [unknown]
Transcript:CBG09872a.1 CBG09872a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG09872b CBG09872b   [unknown]
CDS:CBG09872a CBG09872a   [unknown]

0 RNAi Result

3 Allele

Public Name
WBVar00115349
WBVar00115350
WBVar00115351

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG09872, CAGTACACTCCTATCTGCAAAGTGTGCAAAGCTGCTTTCACCATCACGAATCTCCCTAAA, WBGene00031386   Expr1057368 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  involved_in
  involved_in
  part_of

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  involved_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region