WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00031464 Gene Name  Cbr-cbp-1
Sequence Name  ? CBG09974 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable histone acetyltransferase activity; transcription coregulator activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans cbp-1. In C. elegans, cbp-1 is involved in several processes, including positive regulation of transcription by RNA polymerase II; regulation of distal tip cell migration; and spermatogenesis. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

8 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG09974g.2 CBG09974g.2   [unknown]
Transcript:CBG09974g.1 CBG09974g.1   [unknown]
Transcript:CBG09974f.1 CBG09974f.1   [unknown]
Transcript:CBG09974e.1 CBG09974e.1   [unknown]
Transcript:CBG09974d.1 CBG09974d.1   [unknown]
Transcript:CBG09974c.1 CBG09974c.1   [unknown]
Transcript:CBG09974b.1 CBG09974b.1   [unknown]
Transcript:CBG09974a.1 CBG09974a.1   [unknown]
 

Other

7 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG09974g CBG09974g   [unknown]
CDS:CBG09974f CBG09974f   [unknown]
CDS:CBG09974e CBG09974e   [unknown]
CDS:CBG09974d CBG09974d   [unknown]
CDS:CBG09974c CBG09974c   [unknown]
CDS:CBG09974b CBG09974b   [unknown]
CDS:CBG09974a CBG09974a   [unknown]

0 RNAi Result

1 Allele

Public Name
WBVar00011162

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-cbp-1, GCCAGTTCGCATCGATGAACCCATCAATGTCTCAGCATGGACAACAGCAACCAGGAGGAT, WBGene00031464   Expr1052857 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  enables

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region