WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00031551 Gene Name  Cbr-sod-4
Sequence Name  ? CBG10072 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable copper ion binding activity. Predicted to be involved in superoxide metabolic process. Is an ortholog of C. elegans sod-4. In C. elegans, sod-4 is involved in superoxide metabolic process. Biotype  SO:0001217
Genetic Position 
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG10072b.1 CBG10072b.1   [unknown]
Transcript:CBG10072a.1 CBG10072a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG10072a CBG10072a   [unknown]
CDS:CBG10072b CBG10072b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-sod-4, TGGAAATTCAGACCAATCAAAGACAACTGGAAATGCTGGTGCTCGTCTAGCCTGCGGAAC, WBGene00031551   Expr1057902 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region