WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00031858 Gene Name  CBG10474
Sequence Name  ? CBG10474 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable guanylate cyclase activity and protein kinase activity. Predicted to be involved in cGMP biosynthetic process and intracellular signal transduction. Predicted to be located in membrane. Is an ortholog of C. elegans gcy-6. In C. elegans, gcy-6 is involved in several processes, including positive regulation of calcium-mediated signaling; response to magnesium ion; and response to salt. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG10474.1 CBG10474.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG10474 CBG10474   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG10474, TCGCTGGGTACAAGGTTCCACATTTGCCAGGAGAGAAGATTAATATAAGAGTTGGATTTC, WBGene00031858   Expr1059700 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG10472, CTACTCCTTGGAAGGCGATGATGAGAAGTGTGAAACAATGAGAGACGATTTTCAAGACAT, WBGene00031856   Expr1059269 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

7 GO Annotation

Annotation Extension Qualifier
  located_in
  enables
  enables
  involved_in
  involved_in
  involved_in
  involved_in

0 Homologues

0 Locations

7 Ontology Annotations

Annotation Extension Qualifier
  located_in
  enables
  enables
  involved_in
  involved_in
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region