WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032004 Gene Name  Cbr-kvs-5
Sequence Name  ? CBG10711 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transport; protein homooligomerization; and transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Is an ortholog of C. elegans kvs-5. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

9 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG10711a.1 CBG10711a.1   [unknown]
Transcript:CBG10711c.1 CBG10711c.1   [unknown]
Transcript:CBG10711b.1 CBG10711b.1   [unknown]
Transcript:CBG10711e.1 CBG10711e.1   [unknown]
Transcript:CBG10711d.1 CBG10711d.1   [unknown]
Transcript:CBG10711g.1 CBG10711g.1   [unknown]
Transcript:CBG10711f.1 CBG10711f.1   [unknown]
Transcript:CBG10711i.1 CBG10711i.1   [unknown]
Transcript:CBG10711h.1 CBG10711h.1   [unknown]
 

Other

9 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG10711h CBG10711h   [unknown]
CDS:CBG10711i CBG10711i   [unknown]
CDS:CBG10711a CBG10711a   [unknown]
CDS:CBG10711b CBG10711b   [unknown]
CDS:CBG10711c CBG10711c   [unknown]
CDS:CBG10711d CBG10711d   [unknown]
CDS:CBG10711e CBG10711e   [unknown]
CDS:CBG10711f CBG10711f   [unknown]
CDS:CBG10711g CBG10711g   [unknown]

0 RNAi Result

10 Allele

Public Name
WBVar00116069
WBVar00116067
WBVar00116068
WBVar00116072
WBVar00116073
WBVar00116074
WBVar00116070
WBVar00116071
WBVar00012437
WBVar00012432

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG10714, GCGAGAAACTCGTGAATTATATGGAGCGCTCTCCACCCTCCTCAACAGTGGCAATCATAC, WBGene00032005   Expr1050338 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG10711, GAAAACTAGTCGGAAGTGGAGCCATCGTATGTGGAGTTATGGTTCTGGCACTTCCAATTA, WBGene00032004   Expr1064952 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

8 GO Annotation

Annotation Extension Qualifier
  involved_in
  located_in
  part_of
  enables
  enables
  involved_in
  involved_in
  involved_in

0 Homologues

0 Locations

8 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  located_in
  part_of
  enables
  enables
  involved_in
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region