WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032063 Gene Name  Cbr-ubql-1
Sequence Name  ? CBG10788 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable damaged DNA binding activity. Predicted to be involved in nucleotide-excision repair and proteasome-mediated ubiquitin-dependent protein catabolic process. Is an ortholog of C. elegans ubql-1. In C. elegans, ubql-1 is involved in ERAD pathway; negative regulation of double-strand break repair via homologous recombination; and protein export from nucleus. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG10788b.1 CBG10788b.1   [unknown]
Transcript:CBG10788a.1 CBG10788a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG10788a CBG10788a   [unknown]
CDS:CBG10788b CBG10788b   [unknown]

0 RNAi Result

8 Allele

Public Name
WBVar00137342
WBVar00116150
WBVar00116151
WBVar00116152
WBVar00116153
WBVar00116154
WBVar00116155
WBVar00116156

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Heat shock: 34C 30min. Transcripts that showed significantly increased expression in L2 larva stage C. briggsae animals after incubated in a 34C water bath for 30min. DESeq2 v 1.18.1, fold change > 2, FDR < 0.01. WBPaper00058955:heatshock_upregulated_CBG

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG10788, CCAAGCATGCAGGCTAGCATGTTCAGTCCAGAAGTTGTAAACTCGATTCGCCAGAGTATG, WBGene00032063   Expr1057062 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region