WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032357 Gene Name  Cbr-tra-2
Sequence Name  ? CBG11194 Brief Description  Cbr-tra-2 encodes a plasma membrane protein that is orthologous to C. elegans TRA-2; as in C. elegans, loss of Cbr-tra-2 function results in incomplete sexual cell fate transformations of XX hermaphrodites to male fates, including a one-armed gonad containing only sperm, an abnormal male tail with incomplete sensory rays, and lack of male mating behavior.
Organism  Caenorhabditis briggsae Automated Description  Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in hermaphrodite germ-line sex determination and hermaphrodite somatic sex determination. Is an ortholog of C. elegans tra-2. In C. elegans, tra-2 is involved in developmental process involved in reproduction and oocyte fate determination.
Biotype  SO:0001217 Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG11194b.1 CBG11194b.1   [unknown]
Transcript:CBG11194c.1 CBG11194c.1   [unknown]
Transcript:CBG11194a.1 CBG11194a.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG11194c CBG11194c   [unknown]
CDS:CBG11194b CBG11194b   [unknown]
CDS:CBG11194a CBG11194a   [unknown]

0 RNAi Result

5 Allele

Public Name
ed23
nm21
nm9
nm36
nm29

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tra-2, GAATATGTGCAAAAGTACGATGACCCTAACCAGCCGCCAAGCAGACGGGCAGACCAGTAT, WBGene00032357   Expr1056987 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region