WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032412 Gene Name  Cbr-gcy-7
Sequence Name  ? CBG11271 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity; guanylate cyclase activity; and protein kinase activity. Predicted to be involved in cGMP biosynthetic process and intracellular signal transduction. Is an ortholog of C. elegans gcy-7. In C. elegans, gcy-7 is involved in chemosensory behavior; chemotaxis; and response to magnesium ion. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG11271.1 CBG11271.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG11271 CBG11271   [unknown]

0 RNAi Result

11 Allele

Public Name
WBVar00116755
WBVar00116756
WBVar00116757
WBVar00116758
WBVar00116748
WBVar00116749
WBVar00116751
WBVar00116752
WBVar00116753
WBVar00116754
WBVar00116750

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-gcy-7, TTCTTCAGAATCCCACATCTTCCAAGCGAGCGTATCAATTTGAGAATCGGAATGAACTGC, WBGene00032412   Expr1057990 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

7 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  involved_in
  involved_in
  involved_in

0 Homologues

0 Locations

7 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  involved_in
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region