WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032511 Gene Name  Cbr-sptl-2
Sequence Name  ? CBG11388 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable pyridoxal phosphate binding activity. Predicted to be involved in biosynthetic process. Is an ortholog of C. elegans sptl-2. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG11388b.1 CBG11388b.1   [unknown]
Transcript:CBG11388a.1 CBG11388a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG11388a CBG11388a   [unknown]
CDS:CBG11388b CBG11388b   [unknown]

0 RNAi Result

4 Allele

Public Name
WBVar00137454
WBVar00137453
WBVar00137456
WBVar00137455

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-sptl-2, CCCTGCTACTCATATGACGGAAGGAAGAGTTCGATTCTGTATATCAGCAGCACATACAAA, WBGene00032511   Expr1054490 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region